{"id":1539,"date":"2020-04-02T11:04:12","date_gmt":"2020-04-02T10:04:12","guid":{"rendered":"https:\/\/sites.manchester.ac.uk\/bioms-users\/?p=1539"},"modified":"2020-04-07T15:20:26","modified_gmt":"2020-04-07T14:20:26","slug":"basics-the-biochemistry-of-protein-interactions-and-structure","status":"publish","type":"post","link":"https:\/\/sites.manchester.ac.uk\/bioms-community\/2020\/04\/02\/basics-the-biochemistry-of-protein-interactions-and-structure\/","title":{"rendered":"Basics: The biochemistry of protein interactions and structure"},"content":{"rendered":"<p>[et_pb_section bb_built=&#8221;1&#8243; admin_label=&#8221;section&#8221; fullwidth=&#8221;on&#8221; next_background_color=&#8221;#000000&#8243; global_module=&#8221;322&#8243;][et_pb_fullwidth_menu global_parent=&#8221;322&#8243; _builder_version=&#8221;3.0.106&#8243; menu_id=&#8221;7&#8243; submenu_direction=&#8221;downwards&#8221; fullwidth_menu=&#8221;off&#8221; background_layout=&#8221;dark&#8221; module_class=&#8221;main-navigation&#8221; \/][\/et_pb_section][et_pb_section bb_built=&#8221;1&#8243; fullwidth=&#8221;off&#8221; specialty=&#8221;on&#8221; prev_background_color=&#8221;#000000&#8243; next_background_color=&#8221;#1d1d1d&#8221;][et_pb_column type=&#8221;2_3&#8243; specialty_columns=&#8221;2&#8243;][et_pb_row_inner locked=&#8221;off&#8221;][et_pb_column_inner type=&#8221;4_4&#8243; saved_specialty_column_type=&#8221;2_3&#8243;][et_pb_post_title _builder_version=&#8221;3.0.106&#8243; title=&#8221;on&#8221; meta=&#8221;on&#8221; author=&#8221;on&#8221; date=&#8221;on&#8221; categories=&#8221;on&#8221; comments=&#8221;on&#8221; featured_image=&#8221;on&#8221; featured_placement=&#8221;above&#8221; text_color=&#8221;dark&#8221; text_background=&#8221;off&#8221; locked=&#8221;on&#8221; parent_locked=&#8221;off&#8221; \/][et_pb_text _builder_version=&#8221;3.17.6&#8243; background_layout=&#8221;light&#8221; parent_locked=&#8221;off&#8221;]<\/p>\n<div>\n<div>Proteins are complex and dynamic three dimensional molecules that work in groups and can change each other. Proteins interact with themselves and other proteins via different forms of <em>intra<\/em> (within the same protein) and <em>inter<\/em> (between proteins) <em>molecular forces <\/em>that can either be <em>covalent<\/em> or <em>non-covalent <\/em>in nature. The main covalent interaction is <em>disulphide bonds <\/em>and the main non-covalent interactions are <em>hydrophobic<\/em>, <em>electrostatic<\/em>, <em>polar<\/em> and <em>hydrogen bonding<\/em>. These forces make proteins fold up and interact with other molecules collectively termed the <em>protein structure <\/em>and this can be described in 4 levels. <em>Primary structure <\/em>is the amino acid sequence of the protein, <em>secondary structure <\/em>describes how sections of primary structure can arrange to make defined folds such as <em>alpha helices <\/em>and <em>beta sheets<\/em>, <em>tertiary structure <\/em>describes how these folds can then arrange into higher level structures and <em>quaternary structure <\/em>is how these folded proteins can interact with each other.<\/div>\n<h4 class=\"ms-rteElement-H2B\">Suggested web links:<\/h4>\n<div>For more information on non-covalent interactions click <a href=\"http:\/\/chemwiki.ucdavis.edu\/Organic_Chemistry\/UMM_chemwiki_project\/Organic_Structure_and_Bonding\/Noncovalent_interactions\">here<\/a> (NB hydrophobic interactions don&#8217;t strictly exist but reflect the power of hydrogen bonding in water and the drive to maximise the interactions with electrostatic and polar groups with the water surrounding the protein)<\/div>\n<\/div>\n<div>For more information on protein structure click <a href=\"http:\/\/biowiki.ucdavis.edu\/Wikitexts\/BIS_105:_Murphy\/Proteins\/Protein_Composition_and_Structure\">here<\/a>\u00a0<\/div>\n<div>\n<h4 class=\"ms-rteElement-H2B\">Suggested Wikipedia links:<\/h4>\n<div>For Wikipedia links click on the keyword: <a href=\"https:\/\/en.wikipedia.org\/wiki\/Non-covalent_interactions\">Non-covalent interactions<\/a>, <a href=\"https:\/\/en.wikipedia.org\/wiki\/Disulfide\">disulphide bonding<\/a>, <a href=\"https:\/\/en.wikipedia.org\/wiki\/Protein_structure\">protein structure<\/a><\/div>\n<\/div>\n<p class=\"paragraph ng-attr-widget\"><span class=\"ng-directive ng-binding\">Tags: #Basics, interactions, proteins.<\/span><\/p>\n<p>[\/et_pb_text][et_pb_post_nav _builder_version=&#8221;3.0.106&#8243; 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Proteins interact with themselves and other proteins via different forms of intra (within the same protein) and inter (between proteins) molecular forces that can either be covalent or non-covalent in nature. The main covalent interaction is disulphide bonds [&hellip;]<\/p>\n","protected":false},"author":85,"featured_media":1603,"comment_status":"open","ping_status":"open","sticky":false,"template":"","format":"standard","meta":{"_et_pb_use_builder":"on","_et_pb_old_content":"","_et_gb_content_width":"","_exactmetrics_skip_tracking":false,"footnotes":""},"categories":[23],"tags":[],"class_list":["post-1539","post","type-post","status-publish","format-standard","has-post-thumbnail","hentry","category-basics"],"_links":{"self":[{"href":"https:\/\/sites.manchester.ac.uk\/bioms-community\/wp-json\/wp\/v2\/posts\/1539","targetHints":{"allow":["GET"]}}],"collection":[{"href":"https:\/\/sites.manchester.ac.uk\/bioms-community\/wp-json\/wp\/v2\/posts"}],"about":[{"href":"https:\/\/sites.manchester.ac.uk\/bioms-community\/wp-json\/wp\/v2\/types\/post"}],"author":[{"embeddable":true,"href":"https:\/\/sites.manchester.ac.uk\/bioms-community\/wp-json\/wp\/v2\/users\/85"}],"replies":[{"embeddable":true,"href":"https:\/\/sites.manchester.ac.uk\/bioms-community\/wp-json\/wp\/v2\/comments?post=1539"}],"version-history":[{"count":7,"href":"https:\/\/sites.manchester.ac.uk\/bioms-community\/wp-json\/wp\/v2\/posts\/1539\/revisions"}],"predecessor-version":[{"id":1577,"href":"https:\/\/sites.manchester.ac.uk\/bioms-community\/wp-json\/wp\/v2\/posts\/1539\/revisions\/1577"}],"wp:featuredmedia":[{"embeddable":true,"href":"https:\/\/sites.manchester.ac.uk\/bioms-community\/wp-json\/wp\/v2\/media\/1603"}],"wp:attachment":[{"href":"https:\/\/sites.manchester.ac.uk\/bioms-community\/wp-json\/wp\/v2\/media?parent=1539"}],"wp:term":[{"taxonomy":"category","embeddable":true,"href":"https:\/\/sites.manchester.ac.uk\/bioms-community\/wp-json\/wp\/v2\/categories?post=1539"},{"taxonomy":"post_tag","embeddable":true,"href":"https:\/\/sites.manchester.ac.uk\/bioms-community\/wp-json\/wp\/v2\/tags?post=1539"}],"curies":[{"name":"wp","href":"https:\/\/api.w.org\/{rel}","templated":true}]}}